https://www.abatelab.org/publications daily 0.75 2025-01-22 https://www.abatelab.org/contact daily 0.75 2018-03-28 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508540404188-POJP1T0V2DRKU8T52JFA/UCSF_MB_map.png Contact https://www.abatelab.org/home daily 1.0 2020-05-04 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1511820535406-8XRO6ZVHGZXXVHJ56SSY/Site+splash+page+4_stained+cell.png Home - High-Throughput Single-Cell Analysis Microdroplet platforms for interrogating the genome, transcriptome, and proteome of single cells https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508781755524-0NLFWRU9B53FW89ND6AA/sorting_cropped.gif Home - Advanced Microdroplet Technology Manipulating picoliter volumes to enable high-throughput biology https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1511820532831-U9FBJ78XY7FGCY7CTGKF/Site+splash+page+1_PDM.png Home - Printed Droplet Microfluidics Fluorescence-activated printing of cells and biological reagents https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1511820534557-FKK3DC31VIWUPIADKFVM/Site+splash+page+3_doubles.png Home - Nucleic Acid Cytometry High-throughput sequence-based sorting and enrichment https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1511820535565-CAQD8623EIXT41SG41MV/Site+splash+page+5_directed+evolution.png Home - Mapping Sequence-Function Relationships Droplet microfluidic screening of proteins to identify functional variants https://www.abatelab.org/research-areas daily 0.75 2018-02-12 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508525786006-UTCN9MX88OOBSGID54A3/nih.png Research - NIH https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508525786792-RQF7V4W7XDSRPAXITH5T/qb3.jpg Research - QB3 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508525786633-YMG3FEU8UDG3EQ3TZT4S/nsf.png Research - NSF https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508525785417-27EMDPQOS2TGA9F5BDZW/biohub.png Research - CZ Biohub https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508525785410-W4UZCMNQEAD1IYQD34XU/darpa.jpg Research - DARPA https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508525786159-SNXZJ28P7OO8SVW2GVV5/logo.jpg Research - Sandler Foundation https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508525787200-KNZ4H3EWNGE0ALY2NMNX/rff.jpg Research - Rogers Family Foundation https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508525787298-RXY8QM2R6IP6SMFH9VPO/ucsystem.jpg Research - UC https://www.abatelab.org/single-cell-analysis daily 0.75 2020-05-04 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1509560636859-53OVA7MSBYC08D3APJMW/Abseq_workflow.jpg Single-Cell Analysis The Abseq experimental workflow for profiling single cells based on distinct cell surface proteins (from Shahi et al. 2017) https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1588621181244-7NURC3MTP926EJ25X9EV/dabseq_workflow.png Single-Cell Analysis The experimental DAb-seq workflow, from sample collection to bioinformatics. https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1509560422344-VJ45EDNXSXZYACJGXTGP/Abate-Ben+Fig+1+v01-01.png Single-Cell Analysis Overview of the SiC-seq workflow https://www.abatelab.org/nucleic-acid-cytometry daily 0.75 2017-11-27 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1511740742792-9HA0LFDSBAJNA0BTH0M7/NAC_workflow.png Nucleic Acid Cytometry The general steps in a nucleic acid cytometry workflow (adapted from Clark et al. 2017). https://www.abatelab.org/people daily 0.75 2025-10-26 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1587403363625-NX1O0L0VUO8NSE72YX93/klanger_photo People Krzysztof Langer Postdoctoral Researcher https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/229015de-e281-4c14-aaf3-cec17d49d54e/Caleb_Tong_headshot.jpg People - Make it stand out Caleb Tong Graduate Student https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/7310798d-7074-4e41-aa7d-e889ca4efab1/Drew-Ramos.png People - Make it stand out Drew Ramos Graduate Student https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1507615240588-PGKVNF9US3LHHVJJP1XU/dan_weisgerber.png People Daniel Weisgerber Postdoctoral Researcher https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508886890844-0TGIGLG36F8GGR8WM951/adam_abate.png People Adam Abate Principal Investigator https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/a04fdccc-c00e-480e-9341-780de58b1d49/fatlum_hajredini_c.jpeg People - Make it stand out Fatlum Hajredini Postdoctoral Researcher https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/7122ca4b-265a-4e6a-bb73-cc4894eed7ab/Zachary-Aralis.png People - Make it stand out Zachary Aralis Postdoctoral Researcher https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/f724dc1a-ecb9-4e81-b561-28d328072312/Zinal.jpg People - Make it stand out Zinal Patel Graduate Student https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/e7c5619d-0323-4e51-a468-25f4d1b1d934/CyrusModavi.JPG People Cyrus Modavi (Postdoctoral) Staff Scientist / Lab Manager https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/2c918fa4-24f9-4110-8a37-7924ab06c3c0/HangruiLiu_sq.jpg People - Make it stand out Hangrui (Henry) Liu Postdoctoral Researcher https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/c8170e64-84d0-46dd-a058-ec4dd80730b3/Mo-Wu.jpg People - Make it stand out Mo Wu Postdoctoral Researcher https://www.abatelab.org/cyrus-modavi daily 0.75 2023-10-15 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/6e9a482e-7524-44d3-a365-6d91b108bdf7/CyrusModavi.JPG Cyrus Modavi https://www.abatelab.org/dan-weisgerber daily 0.75 2023-06-03 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1507650544595-A8OUCFS5BGY80DV9KLIT/dan_weisgerber.png Daniel Weisgerber https://www.abatelab.org/microdroplets daily 0.75 2017-11-26 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508191983964-7ULMM8E03SXXNPQDJN7W/microfluidic_circuit Microdroplets Schematic of a microfluidic circuit https://www.abatelab.org/drop-formation daily 0.75 2017-11-26 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508194408855-54LNUHF5DEOKLA8GQM59/drop-formation-1.jpg Drop Formation A simple flow focus dropmaker https://www.abatelab.org/encapsulation daily 0.75 2017-11-26 https://www.abatelab.org/reinjection daily 0.75 2017-11-26 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508203739241-383GAES5RZE18YEJWKX1/reinjection-2.jpg Reinjection Hexagonally-packed microdroplets https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508203611448-0PNBQGFJYEOA6TDN0HYU/reinjection-1.PNG Reinjection Droplets being reinjected into a microfludic channel https://www.abatelab.org/drop-splitting daily 0.75 2017-11-26 https://www.abatelab.org/picoinjection daily 0.75 2017-11-26 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508204535155-8TGLJE7TK7ZSV6OHH332/picoinjection-1.jpg Picoinjection Volume injected by picroinjector as a function of flow rate, pressure, and voltage. https://www.abatelab.org/incubation daily 0.75 2017-11-26 https://www.abatelab.org/detection daily 0.75 2017-11-26 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508204726475-WJD1BFAJB4854IC9JLSE/detection-1.png Detection An experimental setup for detecting fluorescent signal from microdroplets. https://www.abatelab.org/sorting daily 0.75 2017-11-26 https://www.abatelab.org/valves daily 0.75 2017-11-26 https://www.abatelab.org/air-triggered-dropmaking daily 0.75 2017-11-26 https://www.abatelab.org/double-emulsification daily 0.75 2017-11-26 https://www.abatelab.org/higher-order-emulsification daily 0.75 2017-11-26 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508206474761-UZR0CYV8F9V6F14KPH2Y/quintuple-emulsions.jpg Higher-Order Emulsification Quintuple emulsions https://www.abatelab.org/parallel-dropmaking daily 0.75 2017-11-26 https://www.abatelab.org/droplet-merger daily 0.75 2017-11-26 https://www.abatelab.org/printed-droplet-microfluidics daily 0.75 2017-11-08 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1509490970489-SLSX6N7MSHAGKH13AD84/printer_diagram.jpg Printed Droplet Microfluidics   Diagram of the droplet printer microfluidics (from Cole et al. 2017) https://www.abatelab.org/physics-soft-materials daily 0.75 2017-10-17 https://www.abatelab.org/adam-abate daily 0.75 2023-02-10 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1508538010700-EKNRR0Z78QWQ3FTUG63P/adam_abate.jpg Adam Abate https://www.abatelab.org/bioinformatics daily 0.75 2017-11-02 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1509598005655-6HE1ZB4Q5RE5XC16TFLH/tsne_contig_coloring.png Bioinformatics Using connectivity information from single-cell barcodes, contigs from different bacterial species cluster together following dimensionality reduction https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1509568340197-YAU4SYM6KUSUJXJHJRSV/barcode_clustering.PNG Bioinformatics Illustration of mutated barcode groups [red] and isolated barcodes [green] (from Shahi et al., 2017) https://www.abatelab.org/synthetic-biology daily 0.75 2018-02-12 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1511765168136-SHK2HYALIEFB0LS11DE9/screening_workflow.png Synthetic Biology Overview of microfluidic screening workflow in droplets (from Romero et al. 2015). https://www.abatelab.org/jobs daily 0.75 2021-09-03 https://www.abatelab.org/krzysztof-langer daily 0.75 2020-04-20 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/1587403288272-SO1DHF9G5UJS9N9TYM6Q/klanger_photo.JPG Krzysztof Langer https://www.abatelab.org/hangrui-liu daily 0.75 2023-06-03 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/2c918fa4-24f9-4110-8a37-7924ab06c3c0/HangruiLiu_sq.jpg Hangrui Liu https://www.abatelab.org/fatlum-hajredini daily 0.75 2023-06-04 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/a04fdccc-c00e-480e-9341-780de58b1d49/fatlum_hajredini_c.jpeg Fatlum Hajredini https://www.abatelab.org/caleb-tong daily 0.75 2023-06-04 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/229015de-e281-4c14-aaf3-cec17d49d54e/Caleb_Tong_headshot.jpg Caleb Tong https://www.abatelab.org/drew-ramos daily 0.75 2025-10-18 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/7310798d-7074-4e41-aa7d-e889ca4efab1/Drew-Ramos.png Drew Ramos https://www.abatelab.org/masashi-ugawa daily 0.75 2025-01-22 https://www.abatelab.org/mo-wu daily 0.75 2025-10-18 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/c8170e64-84d0-46dd-a058-ec4dd80730b3/Mo-Wu.jpg Mo Wu https://www.abatelab.org/zachary-aralis daily 0.75 2025-10-26 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/7122ca4b-265a-4e6a-bb73-cc4894eed7ab/Zachary-Aralis.png Zachary Aralis https://www.abatelab.org/zinal-patel daily 0.75 2025-10-26 https://images.squarespace-cdn.com/content/v1/59c885b8d2b85751f50de805/f724dc1a-ecb9-4e81-b561-28d328072312/Zinal.jpg Zinal Patel